Rmarkdown suppress output1/15/2023 This chapter provides a brief introduction to R Markdown, as well as the papaja package to produce output in the APA style. For instance, this book was completely written in R Markdown, with help from the additional bookfown package ( ). R Markdown is extremely flexible and useful. Anyone with the R Markdown file would be able to reproduce everything in a scientific paper. Including all analysis in the same document allows for completely reproducible research. A big benefit of this is that can keep your analysis and write-up in one place, so you don’t have to copy-paste results from one place to another (which often results in errors and issues). Markdown documents can be “parsed” to produce documents in a variety of formats, including HTML, PDF, Open Document Type, Microsoft Word, you name it… R Markdown integrates Markdown with R, allowing you to use R to include figures, tables, and R output (as well as the corresponding code, if you wish) directly in the document. Markdown itself is a lightweight markup language, with a plain-text formatting syntax. One of the many things that makes R extremely useful as a data analysis platform is its ability to generate high-quality reproducible reports and documents via R Markdown.
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